All functions

biclusteringLBM()

biclusteringLBM: perform a biclustering on incidence/count matrix using the blockmodel library (LBM models)

buildMatrix()

buildMatrix: Build an incidence matrix. number of varieties by specie in a given agrosystem

covariatesanovaLBM()

CovariatesanovaLBM: Create a list of synthetic covariate to fit a LMB with an anova like covariate

covariatesDegreeCorrectedLBM()

CovariatesDegreeCorrectedLBM: Create a list of synthetic covariate to fit a degree-corrected LB

dfcount

A data.frame of counts of type of supply

dfCountGeo

A data.frame of crops by study_grp

dfcrop

A data frame of crops by farm

plotMap()

a leaflet map colorized by cluster

plotMapProfile()

plotMapProfile a graphical function combining 2 or 3 plots of the results of a biclustering analysis

plotMatrix()

a function to plot an incidence matrix (input M) or a partition results of biclusteringLBM() function (inputs df.row, df.col)

plotPieOnMap()

plotPieOnMap a graphical function to plot a map and pies by localisation